Flora Sumatra: Digitizing and data basing specimens of the Sumatran Flora deposited at Herbarium Universitas Andalas (ANDA)-Part 2

Записи данных

Данные этого occurrence ресурса были опубликованы в виде Darwin Core Archive (DwC-A), который является стандартным форматом для обмена данными о биоразнообразии в виде набора из одной или нескольких таблиц. Основная таблица данных содержит 17 600 записей.

Данный экземпляр IPT архивирует данные и таким образом служит хранилищем данных. Данные и метаданные ресурсов доступны для скачивания в разделе Загрузки. В таблице версий перечислены другие версии ресурса, которые были доступны публично, что позволяет отслеживать изменения, внесенные в ресурс с течением времени.

Версии

В таблице ниже указаны только опубликованные версии ресурса, которые доступны для свободного скачивания.

Как оформить ссылку

Исследователи должны дать ссылку на эту работу следующим образом:

Nurainas N, Taufiq A, Handika H, Harapan T S, Syamsuardi S (2022): Flora Sumatra: Digitizing and data basing specimens of the Sumatran Flora deposited at Herbarium Universitas Andalas (ANDA)-Part 2. v1.8. Herbarium of Andalas University. Dataset/Occurrence. https://doi.org/10.15468/55evew

Права

Исследователи должны соблюдать следующие права:

Публикующей организацией и владельцем прав на данную работу является Herbarium of Andalas University. Эта работа находится под лицензией Creative Commons Attribution Non Commercial (CC-BY-NC 4.0).

Регистрация в GBIF

Этот ресурс был зарегистрирован в GBIF, ему был присвоен следующий UUID: 39e85504-1ebe-4671-be65-19ccdc1d7c7d.  Herbarium of Andalas University отвечает за публикацию этого ресурса, и зарегистрирован в GBIF как издатель данных при оподдержке Indonesian Biodiversity Information Facility.

Ключевые слова

Occurrence; Occurrence

Контакты

Географический охват

The specimens hosted at the Herbarium of Andalas University (ANDA) are primarily from Sumatra. With 473,481 km² in size, the island is the sixth biggest island in the world. It is tropical island located at the coordinate 0° 0′ 0″ N, 102° 0′ 0″ E. The specimens hosted at the herbarium were from several provinces, such as West Sumatra, Jambi, Riau, North Sumatra, Aceh, Bengkulu and Lampung. The specimens were also collected from conservation areas on Sumatra, such as the Kerinci Seblat National Park, Siberut National Park, Lembah Harau Nature Reserve, Rimbo Panti Nature Reserve, Lurah Berangin Nature Reserve, Bung Hatta Forest Park Conservation Area, and Syarif Hasyim Forest Park Conservation Area. All of the collections were collected from wide range of altitudinal elevations and habitats, from lowland tropical forest up to highland forest as well as montane forest on the Bukit Barisan Mountains. In general, the collections were from volcanoes on Sumatra, such as Mt. Sibayak, Mt. Sinabung, Mt. Sorik Merapi, Mt. Pangulubao, Mt. Sibuatan, Mt. Talamau, Mt. Sago, Mt. Marapi, Mt. Singgalang, Mt. Tandikek, Mt. Gadut, Mt. Talang, Mt. Tujuh, Mt. Kerinci, Mt. Pesagi.

Таксономический охват

We have digitized 17,600 sheets of specimens in the group of Magnoliopsida. Consisting of 14 families: Acanthaceae, Anacardiaceae, Annonaceae, Apocynaceae, Compositae, Convolvulaceae, Cucurbitaceae, Ebenaceae, Lauraceae, Leguminosae, Melastomataceae, Primulaceae, Rutaceae and Ulmaceae. In total, we have digitized 631 species, 118 in genera rank and 194 in family rank. The most digitized specimens in amount are Leguminosae and Melastomataceae. Among all of the species that have been digitized, 96 species are listed in IUCN Redlist database, consisting of Least Concern (85 species), Data Deficient (3 species), Vulnerable (6 species), Near Threatened (1 species) and Endangered (1 species) (IUCN, 2019).

Временной охват

Данные проекта

The project started in May 2019 and will end in April 2020. The aims of the project are to digitize the collections hosted at Herbarium ANDA; to prepare and establish well-managed and integrated specimen database following GBIF standard; to manage collections, locality information and specimen images; and to produce the checklist of the Flora of Sumatra. In this project, all the digitized species has also been stored in an offline database system. The participants and the main stakeholders involved in the projects consisted of students and lecturers at the Department of Biology at Andalas University, some world’s well-known herbariums including their staffs, and our domestic partner, the Indonesian Biodiversity Information Facility, as well as respected plant taxonomists working on the targeted taxa. Students and lecturers at the Department of Biology Andalas University are our main partner to provide supports for the project from within the university. Our herbarium partners participate for data verification and specimen identification. InaBIF provides us with their expertise and support for data publication.

Исполнители проекта:

Методы сбора

The collecting method for the dried specimens was referred to published procedures of preparing herbarium materials (Bridson and Forman,1992). The plant materials were collected and pressed in the field then mounted on an A2 paper after the specimens were dried. Before installation into the herbarium cabinets, the specimens were put into plastic bags. Every sheet of specimens was labeled with the standard information for herbarium collections, including taxonomic identification, locality information, geo-references, collector information, and ecological data. For insect control, we freeze the specimens periodically in -20 degrees Celsius freezer for 72 hours. All of the specimens were stored in the herbarium cabinets. The storage rooms were equipped with temperature and humidity control. All of the specimens were in alphabetical orders based on the families, grouped in several groups of plants, such as dicots, monocots, ferns, and mosses.

Описание этапа методики:

1. The information on the specimen labels is our main data source. For data collection, we conducted in three steps: data capture, data cleaning, and data publication. In the data capture process, we collected all the information on the specimen’s label, and we input the information into Microsoft Excel spreadsheets using Darwin-Core format. In this process, we grouped the specimen information into three groups, consisting of data occurrence, taxon information, and event. We save the file in csv (comma-separated values) format. We included specimen photos and scanning data into the database incorporated in associateMedia field. All the images were stored in flickr-pro media, which then will link with the filed in the dataset. We conducted data cleaning to ensure consistency and standardized data input for the dataset. We used OpenRefine for batch error handling, Canadensys tools for coordinate conversion, and Splink for coordinate verification. To verify the taxonomic nomenclature, we used resolver, iPlant collaborative, ECAT, and Plant list. All the tools we used are open-source software or available as an open online platform. Data publication includes data publishing on GBIF and scientific papers. We published all the dataset that has been cleaned and verified according to our standard on GBIF website using Integrated Publishing Toolkit (IPT) available through the link http://ipt.biologi.lipi.go.id/. After verified by GBIF, all the data will be published under the publisher Herbarium of Andalas University, available through the link https://www.gbif.org/publisher/43f4255c-f218-4a17-857a-ba3ac8456191. The data paper is written following the metadata template available in the IPT. For scientific papers, we will publish the data following the targeted journal format.

Данные коллекции

Библиографические ссылки

1. AKHRIADI, P., PRIMALDHI, A. and HAMBALI, M., 2008. Nepenthes naga, a new species of Nepenthaceae from Bukit Barisan of Sumatra. Reinwardtia, 12(5), pp.339-342.
2. Ashton, P. S. 1982. Flora Malesiana. Series I-Spermatophyta. Flowering Plants Vol. 9, part 2, Dipterocarpaceae. Martinus Nijhoff. The Hague, Boston, London.
3. Bridson, D., Forman, L. 1992. The Herbarium Handbook. Whitstable Litho Printers Ltd. Great Britain.
4. Hernawati and Pitra A. 2006. A Field Guide to the Nepenthes of Sumatra. Nepenthes Team and PILI-NGO Movement. Bogor. Indonesia.
5. Hughes, M., GIRMANSYAH, D. and Ardi, W.H., 2009. Seven new species of Begonia from Sumatra. Gard. Bull. Singapore, 61, pp.29-44.
6. Hughes, M., Girmansyah, D. and Ardi, W.H., 2015. Further discoveries in the ever-expanding genus Begonia (Begoniaceae): fifteen new species from Sumatra. European journal of Taxonomy, (167).
7. IUCN. 2018. https://www.iucnredlist.org/. Accessed in Februari 2019. Kalkman, C. (1993). Rosaceae. Flora Malesiana-Series 1, Spermatophyta, 11(2), 227-351.
8. Kemetrian Lingkungan Hidup dan Kehutanan Republik Indonesia. Peraturan Mentri Lingkungan Hidup dan Kehutanan Republik Indonesia Nomor P.92/MENLHK/SETJEN/KUM.1/8/2018. Tentang Jenis Tumbuhan Satwa yang dilindungi.
9. Lee, C.I.C. and Akhriadi, P., 2006. Two new species of Nepenthes (Nepenthaceae) from North Sumatra. Blumea-Biodiversity, Evolution and Biogeography of Plants, 51(3), pp.561-568.
10. Plant List. 2019. http://www.theplantlist.org/. Accessed Februari 2019. Shaw, H. A. (1981). the Euphorbiaceae of Sumatra. Kew Bulletin, 239-374.
11. Utami, N. 2006. Impatiens spp. (Balsaminaceae) ednemik di Sumatera dan potensi sebaaga tanaman hias. Biodiversitas. Vol. 7 (2) 2006: 135-138
12. Van Der Meijden, R. (1984). Polygalaceae. Flora Malesiana-Series 1, Spermatophyta, 10(1), 455-539.

Дополнительные метаданные